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1    Brockmann H und Bode J (1971) WidersprĂŒchliche Ergebnisse bei Konfigurationsbestimmungen durch kinetische Racematspaltung. Liebigs Ann. Chem. 748:20-25.
2      Bode J und Brockmann H (1972) Zur relativen Konfiguration 2.3-Dialkyl-substituierer BernsteinsĂ€uren.Chem. Ber. 105:34-44
3      Brockmann H und Bode J (1974)  Bestimmung der absoluten Konfiguration von Chlorophyll a nach der Methode von Horeau. Liebigs Ann. Chem. 1974:1017-1027.
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4      Raftery MA, Vandlen R, Michaelson D, Bode J, Moody T, Chao Y, Reed K, Deutsch J & Duguid J (1974) The biochemistry of an acetylcholine receptor. J. Supramolec. Struc. 2:582-592. .
5      Raftery MA, Bode J, Vandlen R, Michaelson D, Deutsch J & Moody T (1974) “Characterization of acetylcholine receptors”. Proc. Mosbach Colloq. L. Jaenicke, ed.. pp 541-564
6      Michaelson  D, Vandlen R, Bode J, Moody T, Schmidt J &  Raftery MA (1974)  Some molecular properties of an isolated acetylcholine receptor ion-translocation protein Arch. Biochem. Biophys. 165:796-804. http://dx.doi.org/10.1016/0003-9861(74)90309-9. PDF (725 K)
7      Raftery MA, Bode J, Vandlen R, Michaelson D, Deutsch J, Moody T, Ross MJ & . Stroud RM. (1974) Sund H, ed.. “Structural and functional studies of an acetylcholine receptor”. Symp. on Protein-Ligand Interactions, Konstanz 328-355,
8      Reed K, Vandlen R, Bode J, Duguid J & Raftery MA. (1975) Characterization of Acetylcholine-Receptor-Rich and acetylcholine-esterase-rich particles from torpedo californica electroplax. Arch. Biochem. Biophys. 167:138-144. http://dx.doi.org/10.1016/0003-9861(75)90449-X . PDF (1628 K)
9      Bode J, Blumenstein M & Raftery MA (1975) Non-identical alkylation sites in rabbit muscle glyceraldehyde-3-phosphate dehydrogenase. Biochemistry 14:1146-1152PDF
10     Bode J, Blumenstein M & Raftery MA. (1975) 19F Nuclear magnetic resonance studies of structure and function relationships in trifluoroacetonylated rabbit muscle glyceraldehyde-3-phosphate dehydrogenase. Biochemistry 14:1153-1160. PDF
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11     Bode J & Wagner KG (1975)  The use of subunit-exchange chromatography for the group-specific fractionation of histones. Biochem. Biophys. Res. Comm. 62, 868-876. http://dx.doi.org/10.1016/0006-291X(75)90403-9. PDF (615 K)
12     Bode J & Willmitzer L (1975) Application of fluorescamine to the study of protein-DNA-interactions. Nucleic Acids Res. 2:1951-1965. PDF (1.0M) .
13     Gorenstein DG, Wyrwicz AM & Bode J (1976) The interaction of uridine and cytidine monophosphates with ribonuclease; 31P-NMR Studies. J. Amer. Chem. Soc. 98:2308-2314. PDF
14     Wagner KG, Bode J, K. Wehling & L. Willmitzer (1976)  Sperm-specific proteins; interaction with DNA and chromatin and influence of phosphorylation thereon. Stud. Biophys. 55:39-48.
15     Wagner KG, H. A. Arfmann, Bode J, K. Wehling & L. Willmitzer (1976). The interaction of basic proteins with DNA and chromatin. development of new methods. Nucleic Acids and Protein Synthesis in Plants - Colloques Internationaux du Centre National de la Recherche Scientifique (CNRS), Strasbourg 261:103-107.
16     Bode J, L. Willmitzer & K. Opatz (1977) On the competition between protamines and histones: studies directed towards the understanding of spermiogenesis. Eur. J. Biochem. 72:393-403.
17     L. Willmitzer, Bode J & Wagner KG (1977)  “Phosphorylated pProtamines I. Binding stoichiometry and thermal stability of complexes with DNA”. Nucleic Acids Res. 4:149-162. PDF
18     L. Willmitzer, Bode J & Wagner KG (1977)  “Phosphorylated protamines II. Circular dichroism of complexes with DNA; dependency on ionic strength. Nucleic Acids Res. 4:163-176. PDF (911K) 
19     Bode J & Lesemann D (1977)  The anatomy of cooperative binding between protamines and DNA”. Hoppe Seyler's Z. Physiol. Chem. 358:1505-15121.
20     Wagner KG, Bode J, K.-W. Hofmann & L. Willmitzer (1978) Studies on the mechanism of DNA condensation by basic chromosomal proteins. Stud. Biophys. 67:85 (Microfiche 2/7-16).
21     Bode J & Standt UD (1978)  Structural aspects of histone complexes and nucleosomes revealed by the accessibility of cysteine side chains. Z. Naturforsch. 33c:884-890.
22     Bode J (1979) Inter- and intramolecular crosslinks in histone H3 induced by 5,5'-Dithiobis-(2-nitrobenzoic acid). Analyt. Biochem. 94: 465-469. http://dx.doi.org/10.1016/0003-2697(79)90389-0
23     Bode J, Moody T, . Schimerlik M & Raftery MA (1979) Uses of fluorescent cholinergic analogues to study binding sites for cholinergic ligands in Torpedo Californica acetylcholine receptor. Biochemistry 18:1855-1861. PDF
24     Bode J, Willmitzer L, Arfmann HA & Wehling K (1979).  Condensation of DNA and chromatin by histones H1, H5 and protamines; the influence of a protein phosphorylation. Int. J. of Biol. Macromol. 1:73-78. http://dx.doi.org/10.1016/0141-8130(79)90036-9
25     Bode J (1979). On the reactions of Fluorescamine with chromosomal proteins”. Analyt. Biochem. 99:274-280
26     Hofmann KW, Arellano A, Arfmann HA & Bode J (1980) Modulation of histone H5-nucleosome interactions by H5 phosphorylation. Int. J. Biol. Macromol. 2:25-32. http://dx.doi.org/10.1016/0141-8130(80)90006-9
27     Bode J, Schröter H & Maass K (1980) Dissolvable disulfide-polyacrylamide gels for the electrophoretic analysis of chromosomal proteins and for affino-electrophoresis of thiol-proteins. J. Chromatog. 190:437-444. http://dx.doi.org/10.1016/S0021-9673(00)88249-7
28     Arfmann HA & Bode J (1980) “Specificity of histone phosphorylation. Influence of nucleosome structure”. Int. J. Biol. Macromol. 2: 109-112. http://dx.doi.org/10.1016/0141-8130(80)90038-0
29     Bode J & Henco H (1980) Prepartion and properties of a nucleosomal particle containing 180 base pairs of DNA. Int. J. Biol. Macromol. 2:122-128. http://dx.doi.org/10.1016/0141-8130(80)90062-8
30     Bode J & Wagner KG (1980) The cooperative exposure of histone H3 thiols in core particles. Int. J. Biol. Macromol. 2:129-136 http://dx.doi.org/10.1016/0141-8130(80)90063-X
31     Bode J, Henco K & Wingender E (1980)  Modulation of the nucleosome structure by histone acetylation. Eur. J. Biochem. 110:143-152.
32     Bode J (1980). “Biotechnologische Anwendung Tierischer Zellkulturen”. In: Handbuch der Biotechnologie PrĂ€ve P, Faust A, Sittig W, ed., 1. Auflage (1980). Akademischen Verlagsgesellschaft. 2. Auflage (1984) im Oldenbourg Verlag. 3. neugefasste Auflage (1986) im Oldenbourg Verlag.
33     GĂłmez-Lira MM & Bode J (1981) Effects of butyrate upon the metaphase-specific deacetylation of histone H4. FEBS Lett. 127:228-232. http://dx.doi.org/10.1016/0014-5793(81)80212-8
34     Schröter H, GĂłmez-Lira MM, Plank KH & Bode J (1981) The extent of histone acetylation induced by butyrate and the turnover of acetyl groups depend on the cell line.Eur. J. Biochem. 120:21-28
35     Wingender E, Maass K & Bode J (1981)  Influence of cysteine-specific labels upon the stability of nucleosomes. Int. J. Biol. Macromol. 3:114-120. http://dx.doi.org/10.1016/0141-8130(81)90076-3
36     Bode J, Wingender E & Plank KH (1982) Parameters affecting the superreactivity of the cysteine side chains in histone H3; characterization of a 32-amino-acid peptide including Cys-110. Eur. J. Biochem. 123:23-28.
37     Bode J, H. K. Hochkeppel & Maass K (1982) Links between the effects of butyrate on histone hyperacetylation and the regulation of interferon synthesis in Namalva and FS-4 cell lines. J. Interferon Res. 2:159-166.
38     H. Schröter & Bode J (1982) The binding sites for large and small HMG proteins. Studies on HMG-nucleosome interactions in vitro. Eur. J. Biochem. 127:429-436.
39     Bode J, GĂłmez-Lira MM & Schröter H (1983)  Nucleosomal particles open as the histone core becomes hyperacetylated. Eur. J. Biochem. 130: 437-445.
40     Bode J (1984) . Nucleosomal conformations induced by the small HMG proteins or by histone hyperacetylation are distinct. Arch. Biochem. Biophys. 228, 354-372
41     Burggraf E, Erard M, GĂłmez-Lira MM & Bode J (1984)  Influence of histone hyperacetylation on nucleosomal particles as visualized by electron microscopy Arch Biochem. Biophys. 229:395-398..
42     Bode J, Pucher HJ & Maass K (1986)  Chromatin structure and induction-dependent conformational changes of human interferon-beta genes in a mouse host cell. Eur. J. Biochem. 158, 393-401.
43     Berlin J & Bode J (1987) ”Plant and animal tissue culture”. In Fundamentals of Biotechnology, PrĂ€ve P, Faust U & Sukatsch DA , ed., Verlag Chemie, pp 133-177, ISBN 3-527-26144-3.
-      ”Tissue culture”. In "Basic Biotechnology - a Student's Guide", PrĂ€ve P, Faust U & Sukatsch DA, ed., Verlag Chemie, pp 133-177, ISBN 3-527-26678-X.
44     Klehr D & Bode J (1988) Comparative evaluation of bovine papilloma virus (BPV): vectors for the study of gene expression in mammalian cells. Mol. Gen. (Life Science Adv.) 7: 47-52.
45     Bode J & Maass K (1988) The chromatin domain surrounding the human interferon-beta gene as defined by scaffold-attached regions (SARs). Biochemistry 27: 4706-4711. PDF
46     Wirth M, Bode J,  Zettelmeißl G & Hauser H (1988) “Isolation of overproducing recombinant mammalian cell lines by a fast and simple selection procedure”. Gene 73:419-426. http://dx.doi.org/10.1016/0378-1119(88)90506-9. PDF (969 K)
47     Bode J & H. Hauser (1990, 1992) “Biologische Wirkungen und  Induktionsmechanismen der Interferone”. In: Jahrbuch Biotechnologie, B& 3, pp 63-100, Praeve P, Schlingmann M, Crueger W, Esser K, Thauer R & Wagner F, ed., Carl Hanser Verlag MĂŒnchen.
-      “Interferons: Biological Activities and Induction Mechanisms”. In Biotechnology Focus, 3rd edition, pp 57-93, PrĂ€ve P, Schlingmann M, Crueger W, Esser K, Thauer R & Wagner F, ed., Carl Hanser Verlag MĂŒnchen
48     Mielke C, Kohwi Y, Kohwi-Shigematsu T & Bode J (1990) Hierarchical binding of DNA fragments derived from scaffold-attached regions: correlation of properties in vitro and function in vivo. Biochemistry 29, 7475-7485. PDF
49    Artelt P, Bode J, Wirth M & Hauser H (1990). “Biologische Sicherheit im Umgang mit genetisch manipulierten SĂ€ugerzellen”,  In: Biologische Sicherheit, 2:289- 302, Weber E, ed.,  BMFT, Bonn.
50     Klehr D, Maass K & Bode J (1991) Scaffold-attached regions from the human IFN-beta domain can be used to enhance the stable expression of genes under the control of various promoters. Biochemistry 30, 1264-1270. PDF
51     Rzepecki R, Smidzinski R, Bode J & Szopa J (1992),  The 65 kDa protein affected endonuclease tightly associated with plant nuclear matrix. J. Plant Physiol. 139, 284-288.
52     Bode J, Kohwi Y, Dickinson L, Joh T, Klehr D, Mielke C & Kohwi-Shigematsu T (1992) Biological significance of unwinding capability of nuclear matrix-associating DNAs. Science 255, 195-197.Full Text (PDF)
53     Klehr D, Schlake T, Maass K & Bode J (1992),  Scaffold-attached regions (SAR elements) mediate transcriptional effects due to butyrate. Biochemistry 31:3222-3229. PDF
54     J. Szopa, Bode J, V. Kay, A. Kozubek & A. F. Sikorski (1993) Does a prototype scaffold/matrix-attached region (SAR sequence)  affect intrinsic nuclear matrix endonuclease specificity? J. Plant Physiol. 141:668-672 (1993)
55     V. Kay & Bode J (1994), Binding specificities of a nuclear scaffold: Supercoiled, single stranded and SAR-DNA. Biochemistry 33:367-374. PDF
56     Schlake T, Klehr-Wirth D, Yoshida M, Beppu T & Bode J (1994) Gene expression within a chromatin domain: The role of core histone hyperacetylation. Biochemistry, 33:4197-4206. PDF
57     Artelt P, Bode J, Mielke C, Grannemann R, Heinemeyer T, Klehr D, Wirth M & Hauser H (1994). “Biologische Sicherheit im Umgang mit genetisch manipulierten SĂ€ugerzellen”,  In: Biologische Sicherheit, 3: 463-502, BMFT, Bonn
58     A. Dietz, V. Kay, Schlake T, J. Landsmann & Bode J (1994) A Plant scaffold attachment region detected close to a T-DNA integration site is active in mammalian cells. Nucleic Acids Res. 22, 2744-2751. PDF
59     Schlake T & Bode J (1994) Use of mutated FLP-recognition-target-(FRT-)sites for the exchange of expression cassettes at defined chromosomal loci. Biochemistry (accel. pub.) 33:12746-12751.
 http://pubs.acs.org/cgi-bin/archive.cgi/bichaw/1994/33/i43/pdf/bi00209a003.pdf
60     Bode J, Schlake T, RĂ­os-RamĂ­rez M, Mielke C, Stengert M, Kay V & Klehr-Wirth D (1995) Scaffold/matrix-attached regions: structural properties creating transcriptionally active loci. In: Structural and Functional Organization of the Nuclear Matrix.. Berezney R & Jeon KW, ed., International Review of Cytology, Vol 162A:389-453. Academic Press.
-      Bode J, Schlake T., RĂ­os-RamĂ­rez M., Mielke C., Stengert, M., Kay, V & Klehr-Wirth, D (1997) Scaffold/matrix-attached regions: structural properties creating transcriptionally active loci". In: Nuclear Matrix, R”. Berezney ed., Academic Press, pp 389-453 (1997).
61     Kay V & Bode J (1995) Detection of scaffold-attached  regions (SARs) by in vitro techniques; activities of these elements in vivo. In: Methods in Molecular and Cellular Biology 5:186-194 -  Methods for studying DNA-protein interactions - an overview,  Papavassiliou AG., & King S L, eds. Inc. Wiley-Liss
62     Mielke C, Tuemmler M & Bode J (1995)  Fast, inexpensive and reproducible assay for puromycin N-acetyltransferase: Selection marker used as a reliable reporter. Trends in Genetics 11:258-259. http:/dx.doi.org/10.1016/S0168-9525(00)89069-1. PDF (278 K)
63     Mielke C, Maass K, Tuemmler M & Bode J (1996) Anatomy of highly-expressing chromosomal sites targeted by retroviral vectors. Biochemistry 35:2239-2252. PDF
64     Bode J, Stengert-Iber M, Schlake T, Kay V & Dietz-Pfeilstetter A (1996) Scaffold/matrix-attached regions: topological switches with multiple regulatory functions. Crit. Rev. Eukaryot. Gene Expression 6:115-138.
65     Dietz-Pfeilstetter A, Kay V, Landsmann J & Bode J (1996) “Characterization of a plant scaffold attached region (SAR) from a T-DNA integration site”. In: Biosafety of transgenic organisms, horizontal gene transfer and expression of transgenes Kap. 25, pp 261-268. Schmidt ER, ed. Springer Heidelberg.
66     Bartsch J, Truss M, Bode J & Beato M (1996) Moderate histone acetylation activates the mouse mammary tumor virus promoter  and remodels its nucleosome structure. Proc. Natl. Acad. Sci.  USA  93:10741-10746. PDF
67     Schuebeler D, Mielke C, Maass K & Bode J (1996) Scaffold/Matrix-attached regions act upon transcription in a context-dependent manner. Biochemistry  35:11160-11169PDF
68     Schuebeler D, Mielke C & Bode J (1997) Excision of an integrated provirus by the action of Flp recombinase. In Vitro Cell. Dev. Biol. Anim.33:825-830.
69     Seibler J & Bode J (1997) Double-reciprocal crossover mediated by Flp-recombinase: a concept and an assay. Biochemistry 36:1740-1747PDF
70    Kohwi-Shigematsu T, Maass K & Bode J (1997)  A thymocyte factor, SATB1, suppresses transcription of stably integrated MAR-linked reporter genes. Biochemistry (accel. pub.) 36:12005-1210). PDF
71     Benham C, T. Kohwi-Shigematsu & Bode J (1997)  Stress Induced Duplex DNA Destabilization in Scaffold/ Matrix Attachment Regions. J. Mol. Biol. 272, 181-196. http://dx.doi.org/10.1006/jmbi.1997.1385. PDF (391 K)
72     Schuebeler D & Bode J (1997) . A sensitive transcription assay based on a simplified nuclear runon protocol.  Trends in Genetics 13:497 [http//www.elsevier.com/locate/tto]
73     Bode J, Bartsch J, Boulikas T,  Iber M, Mielke C, Schuebeler D, Seibler D & Benham C (1998). Transcription-Promoting Genomic Sites in Mammalia: Their Elucidation and Architectural Principles. In: “Textbook of Gene Therapy and Molecular Biology”, Gene Therapy and Molecular Biology Publications, T. Boulikas, ed., Gene Therapy Press, Athens, Greece pp 551-580. PDF
74     Seibler J, Schuebeler D, Fiering S, Groudine M & Bode J (1998) DNA cassette exchange in ES cells mediated by FLP recombinase: an efficient strategy for repeated modification of tagged loci by marker-free constructs. Biochemistry (accel. pub.) 37:6229-6234. PDF
75     Schuebeler D & Bode J (1998). Retargeting of retroviral integration sites for the predictable expression of transgenes and the analysis of cisacting sequences. Biochemistry 37, 11907-11914. PDF
76    Piechaczek C, Fetzer C,  Baiker A, Bode J & Lipps HJ (1999).  A vector based on the SV40 origin of replication and chromosomal S/MARs replicates episomally in CHO cells. Nucleic Acids. Res. 27: 426-428. Print PDF (116K)
77     Iber M, Schuebeler D, Seibler J, Hoexter M & Bode J (1999) Efficient FACS-selection procedure for cells undergoing Flp mediated site specific conversions. Trends in Genetics; TTO, 1999, 1:70:T01668 (http://tto.trends.com). PDF [open access with permission by TIG ]
78     Bode J, Benham C, Knopp A & Mielke C (2000) Transcriptional augmentation: modulation of gene expression by scaffold/matrix attached Regions (S/MAR Elements). Crit. Rev. Eukaryot. Gene Expr. 10:73-90. PDF
79     Baiker A, Maercker C, Piechaczek C, Schmidt SBA, Bode J, Benham C & Lipps HJ (2000) Mitotic stability of S/MAR containing episomal vectors is provided by nuclear matrix association. Nature Cell Biology 2, 182-184. PDF
80     Baer A., Schuebeler D. &  Bode, J (2000). Transcriptional Properties of genomic transgene integration sites marked by electroporation or retroviral infection. Biochemistry 39, 7041-7049. PDF
81     Bode J, Schlake T, Iber M, Schuebeler D,  Seibler J, Snezhkov E & Nikolaev L (2000). The transgeneticistÂŽs toolbox:  novel methods for the targeted modification of eukaryotic genomes. Biol. Chem. 381:801-813. PDF
82     Bode J, Benham C, Ernst E, Knopp A, Marschalek R, Strick R & Strissel P (2000). Fatal connections: when DNA ends meet on the nuclear matrix. J. Cell. Biochem. 35, 3-22 PDF
83     Bode J, Fetzer CP, Nehlsen K, Scinteie M, Hinrich BH, Baiker A, Piechaczek C, Benham C & Lipps HJ (2001)  The hitchhiking principle: optimizing episomal vectors for the use in gene therapy and biotechnology. Gene Ther. Mol. Biol 6:33-46. PDF
84     Lipps HJ & Bode J (2001) Exploiting chromosomal and viral strategies: the design of safe and efficient nonviral gene transfer systems. Curr. Opin. Mol. Therapeut. 3:133-141. Scan
85    Baer A & Bode J (2001) . Coping with kinetic and thermodynamic barriers: RMCE, an efficient strategy for the targeted integration of transgenes”. Curr. Opin. Biotechnol. 12, 473-480. http://dx.doi.org/10.1016/S0958-1669(00)00248-2 .
86   Engel H, Ruehl H, Benham CJ, Bode J & Weiss S (2001) Germline transcripts of the immunoglobulin lambda JC clusters in the mouse: Characterization of the initiation sites and regulatory elements. Mol. Immunol. 38:289-302. http://dx.doi.org/10.1016/S0161-5890(01)00056-6
87    Jenke BH, Fetzer CP, Jönsson F, Fackelmayer FO, Conradt HC, Bode J & Lipps HJ (2002) An episomally replicating vector binds to the nuclear matrix protein SAFA in vivo. EMBO Reports, 3, 349-354. PDF
88    Mielke C, Benham C, Bode J & Breindl M (2002) Nuclear matrix association potential of regulatory elements in the collagen 1a1 gene. J. Cell. Biochem. 84:484-496. http://dx.doi.org/10.1002/jcb.10034. PDF
89   Liebich I, Bode J, Frisch M & Wingender E (2002). S/MARt DB: A database on scaffold / matrix attached regions. Nucleic Acids Res. 30, 372-374. PDF
90    Liebich I, Bode J, Reuter I, Wingender E (2002). Evaluation of sequence motifs found in scaffold/matrix attached regions (S/MAR). Nucleic Acids Res. 15, 3433-3442. PDF
91    Dietz-Pfeilstetter A, Arndt N, Kay V & Bode J (2003). Molecular structure and regulatory potential of a TDNA integration site in petunia. Transgenic Res. 12, 83-99. PDF
92    Bode J, Goetze S, Ernst E, Huesemann Y, Baer A, Seibler J & Mielke C (2003) Architecture and utilization of highly-expressed genomic sites In: New Comprehensive  Biochemistry 38 / Gene Transfer and Expression in Mammalian Cells, Chap 20, pp551-572, Bernardi G, ed.; S. Makrides S, volume ed.
93     Gluch A, Benham C & Bode J (2003) Computational and in vitro analysis of destabilized DNA regions in the interferon gene cluster: the potential of predicting functional gene domains. Biochemistry 42, 154-166. PDF
94    Lipps HJ, Jenke ACW, Nehlsen K, Scinteie M, Stehle IM & Bode J (2003) Chromosome-based vectors for gene therapy. Gene 304:23-33. PDF
95   Bode J, Goetze S, H. Heng, S. A. Krawetz & Benham C (2003) From DNA structure to gene expression: mediators of nuclear compartmentalization and -dynamics.  Chromosome Res. 11:435-445http://dx.doi.org/10.1023/A:1024918525818
96    Goetze S, Y. Huesemann, A. Baer & Bode J (2003) Functional characterization of transgene integration patterns by halo-FISH: electroporation versus retroviral infection. Biochemstry 42:7035-7043. PDF
97     Cesari F, Rennekampff V, Vintersten K, Vuong L, Bode J, Seibler J, Wiebel FF & Nordheim A (2004). Site-directed mutagenesis of the murine Elk-1 locus by RMCE. Genesis 38:87-92. PDF
98     Heng HHQ, Goetze S, Ye CJ, Lu W, Liu G, Bremer S, Hughes M, Bode J & Krawetz SA (2004). Chromatin loops are selectively anchored using scaffold/matrix-attachment regions. J. Cell Sci. 117: 999-1008. PDF
99     Jenke, AW., Stehle IM., Eisenberger T, Baiker A, Bode J, Fackelmeyer, FO & Lipps HJ (2004) Nuclear scaffoldmatrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome. Proc. Natl. Acad. Sci. USA,101, 11322-11327. PDF
100    Vidakovic, M., Grdovic N, Quesada, P., Bode J & Poznanovic, G (2004) Poly(ADP-ribose) polymerase-1: association with nuclear lamins in rat hepatocytes. J. Cell. Biochem. 93, 1155-168. HTML PDF
101    Albrecht P., Bode J, Buiting K., AK P & Lohmann DR (2004). Recurrent deletion of a region containing exon 24 of the RB1 gene caused by non-homologous recombination between a LINE-1HS and MER21B element. J. Med. Genet. 41: e122. Full Text (PDF)
102  Goetze S, Baer A, Winkelmann S, Nehlsen K, Seibler J, Maass K & Bode J (2005) Genomic bordering elements: their performance at pre-defined genomic loci. Mol. Cell. Biol. 25: 2260-2272. Full Text (PDF)
103  Vidaković M, Koester M, Goetze S, Winkelmann S, Klar M, Poznanović G &  Bode J  (2005) Colocalization of PARP-1 and lamin B in the nuclear architecture: a halo-fluorescence- and confocal microscopy study . J. Cell. Biochem. 96:555-568. PDF Color Figures
104  Klar M., Stellamanns E, AK P, Gluch A & Bode J (2005). Dominant genomic structures: detection and potential signal functions, Gene, 364:79-89. http://dx.doi.org/10.1016/j.gene.2005.07.023. PDF (648 K)
105  Vidaković M, Poznanović G & Bode J (2005) DNA break repair: refined rules of an already complicated game (2005) Biochem. Cell Biol./Biochim. Biol. Cell. 83:365-373 PDF Volume contents Volume introduction
106 Klar M & Bode J (2005) Enhanceosome formation over the interferon-beta promoter underlies a remote-control mechanism mediated by YY1 and YY2. Mol. Cell. Biol. 25: 10159-10170. http://dx.doi.org/10.1016/j.jmb.2005.11.073. Full Text (PDF)
107 Bode J, Winkelmann S, Goetze S, Spiker S, Tsutsui K, Bi C, AK P & Benham C (2006) Correlations between scaffold/matrix attachment region (S/MAR) binding activity and DNA duplex destabilization energy. J. Mol. Biol. 358:597-613,
http://dx.doi.org/10.1016/j.jmb.2005.11.073, PDF (524 K)
108 Oumard A, Qiao J, Jostock T, Li T & Bode J. (2006) Recommended Method for Chromosome Exploitation: RMCE-based cassette-exchange systems in animal cell biotechnology. Cytotechnology 50:93–108. PDF
109 Winkelmann S,  Klar M, Benham C, AK P, Goetze S, Gluch A &  Bode J (2006) The positive aspects of stress: Strain Initiates Domain Decondensation (SIDD). Briefings in Functional Genomics and Proteomics, 5, 24-31. http://dx.doi.org/10.1093/bfgp/ell003 PDF
110 Akopov SB., Ruda VM., Batrak VV, Vetchinova AS, Chernov  IP, Nikolaev LG,  Bode J. & Sverdlov ED (2006) Identification, genome mapping and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12. Mammalian Genome 17:1042-1049. PDF
111 Nehlsen K, Broll S & Bode J (2006) Replicating minicircles: Generation of nonviral episomes for the efficient modification of dividing cells. Gene Ther. Mol. Biol. 10:233-244. PDF
112 Linnemann AK, Platts AE, Doggett N, Gluch A., Bode J & Krawetz SA. (2007). Genome-wide identification of nuclear matrix attachment regions: an analysis of methods. Biochemical Society Transactions 35:612-617. PDF
113 Schneider B, Nagel S, Kaufmann M, Winkelmann S, Bode J, Drexler HG & MacLeod RAF (2007) t(3;7)(q27;q32) fuses BCL6 to a non-coding region at FRA7H near miR-29. Leukemia advance online publication, Nov 8,2007; doi:10.1038/sj.leu.2405025

114  Gluch A, Vidakovic M & Bode J (2008) Scaffold/matrix Attachment Regions (S/MARs): Relevance for Disease and Therapy, Protein-Protein Interactions as New Drug Targets / Handbook of Experimental Pharmacology 186, Klussmann E., Scott JD eds, Springer 2008, pp 67-103. PDF [ open access from this private homepage kindly permitted by Springer*) ]; regarding the series see: http://www.springer.com/series/164

115 Marella NRV, Zeitz MJ, Malyavantham KS, Pliss A, Matsui S, Goetze S, Bode J, Raska I & Berezney R (2008) Organization of the Type I IFN Gene Cluster in the Human Osteosarcoma Cell Line MG63. Chromosome Res. 16:1177–1192.
116 Zeitz MJ, Marella NRV, Malyavantham KS, Goetze S, Bode J, Raska I & Berezney R. (2009) Organization of the Amplified Type I Interferon Gene Cluster and Associated Chromosome Regions in the Interphase Nucleus of Human Osteosarcoma Cells., Chromosome Res. 2009;17:305-319 http://www.ncbi.nlm.nih.gov/pubmed/19283497
117 Vidakovic M, Gluch A, Poznanovic G & Bode, J. (2009) PARP-1 protein autoregulates its expression by binding to a recognition sequence and to an upstream S/MAR element in its own promoter. J. Mol. Biol. 388:730–750. http://dx.doi.org/10.1016/j.jmb.2009.03.032
118 Qiao J, Oumard A, Wegloehner W & Bode J (2009) Novel Tag-and-Exchange (RMCE) Strategies Generate Master Cell Clones with Predictable and Stable Transgene Expression Properties. J. Mol. Biol. 390:579–594. http://dx.doi.org/10.1016/j.jmb.2009.05.012
119 Iqbal K, Barg-Kues B, Broll S, Bode. J, Niemann H & Kues WA (2009) Reprogramming events in early embryos are reflected by circular plasmid encoded marker genes. BioTechniques 47, 959–968 http://dx.doi.org/10.2144/000113270
120 Broll S, Oumard A, Hahn K, Schambach A & Bode J (2010) Minicircle Performance Depending on S/MAR-Nuclear Matrix Interactions. J. Mol.Biol. 395 (5), 950-965  http://dx.doi.org/10.1016/j.jmb.2009.11.066 
121 Voelkel C, Galla M., Maetzig T., Warlich E., Kuehle J., Zychlinski D, Bode, J, Cantz T, Schambach A, Baum C (2010) Retroviral polyprotein - mediated transduction of Flp recombinase. Proc. Natl. Acad. Sci. 107, 7805-7810 http://www.pnas.org/cgi/doi/10.1073/pnas.0914517107
122 Turan S, Kuehle J, Schambach A,  Baum, C & Bode, J (2010) RMCE-multiplexing: versatile extensions of the Flp-Recombinase-Mediated Cassette-Exchange technology. J. Mol. Biol.  402 , 52-69. http://dx.doi.org/10.1016/j.jmb.2010.07.015
123 Turan S, Galla M., Ernst E., Qiao J., Voelkel C, Schiedlmeier B, Zehe C & Bode J (2010) Recombinase-mediated cassette exchange (RMCE): traditional concepts and current challenges, J. Mol. Biol., 407(2):193-221 http://dx.doi.org/10.1016/j.jmb.2011.01.004 [9]
124 Turan, S. and Bode, J. (2011)  Site-specific recombinases: from tag-and-target- to tag-and-exchange-based genomic modifications FASEB J. 25, 4088-4107 http://dx.doi.org/10.1096/fj.11-186940
125 Heinz N, Broll S,  Schleef  M, Baum C and Bode J (2012) Filling a gap: S/MAR-based replicating minicircles, CliniBook - Nonviral Platform; Clinigene Network pp271-277. EDP Sciences; ISBN 978-2-84254-171-2; EAN 9782842541712 PDF [Free access kindly permitted; EDK group EDP Sciences 25 rue Daviel 75013 PARIS (Copyright owner, Jan 12, 2012)]
126      Kober L, Zehe C & Bode J (2012) Development of a novel ER stress based selection system for the isolation of highly productive clones. Biotech. Bioeng.. 109(10), 2599-2611.http://dx.doi.org/10.1002/bit.24527  
127      Lars Kober1, Christoph Zehe2, Juergen Bode3 (2012) Optimized signal peptides for the development of high expressing CHO cell lines, Biotech. Bioeng. 109 http://dx.doi.org/10.1002/bit.24776  
128      Doetsch M., Gluch A, Poznanović G, Bode J, Vidaković M (2012) YY1-binding sites provide central switch functions in the PARP-1 gene expression network. PLOS-one 7(8) e44125.http://dx.doi.org/10.1371/journal.pone.0044125 . http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0044125
129      Turan S, Zehe C, Kuehle J, Qiao J, Bode J. (2013) Recombinase-Mediated Cassette Exchange (RMCE) - a rapidly-expanding toolbox for targeted genomic modifications. Gene 515, 1–27. http://dx.doi.org/10.1016/j.gene.2012.11.016
130      Nehlsen K, Broll S, Kandimalla R, Heinz N, Heine M, Binius S, Schambach A & Bode J (2013) Replicating Minicircles: Overcoming the limitations of transient and of stable expression systems. In "Minicircle and Miniplasmid DNA Vectors - The Future of Non-viral and Viral Gene Transfer" 1st Edition, pp115-162, Schleef, M. (ed.), ISBN 978-3-527-32456-9 - Wiley-VCH, Weinheim.

 

 

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Berichte und populÀrwissenschaftliche Artikel

  • Kues W, Niemann H, Iqbal K, Garrels W & Bode J (2009) Nonviral episomes permit targeted expression in mammalianembryos. REBIRTH Newsletter 03-09, 6-7. PDF
  • S. Broll, K. Nehlsen & J. Bode (2007) Kleine Kreise mit großem Potenzial. Chem. Rundschau 2007 (1-2), 40-41.
  • J. Bode (2003) Vektor-Design: Die funktionelle Organisation der Gene als Lehrmeister in  ”Gendoping - die DopingbekĂ€mpfung rĂŒstet sich” Bundesinstitut fĂŒr Sportwissenschaft: Wissenschaftliche Berichte und Materialien Band 07, pp 53-64, Wolfgang Hartmann, Red (Berichte von der 5. Dopingkleinkonferenz, 10. Jul. 2002, Bundesinstitut fĂŒr Sportwissenschaft, 53177 Bonn)   Besprechung; PDF
  • S. Goetze, M. Klar, K. Maass, K. Nehlsen, A. Oumard, S. Winkelmann & J. Bode (2004) Den Viren nachempfunden: Effiziente Modifikation von SĂ€ugerzellen BIOforum 1-2, 34-36.

Abstracts

  • Broll S, Nehlsen K & Bode J (2007) Replicating Non-Viral Minicircles: Novel Tools for Predictable Transgenesis. Hum Gene Ther.18(10), 950 (Inv 26)
  • Broll S, Nehlsen K, Oumard A & Bode J (2007) S/MARs enable the generation of nonviral replicating minicircles. Transgenic Research 16(6), Abstract UC Davis Transgenic Animal Research Conference VI, 839-863 http://dx.doi.org/10.1007/s11248-007-9142-7 
  • Broll S, Bode J & Goetze S (2008) Prediction of gene-regulatory and replication functions by SIDD structure analysis. Hum. Gene Ther. 19(10), 1071-1072 (Inv 44)
  • KymĂ€lĂ€inen HE, Bode J, Foster K, Yanez-Munoz RJ & Dickson GP (2009) Stress-Induced Duplex Destabilisation: An In Silico and In Culture Analysis of Viral Vector Genomes Incorporating S/MAR Elements. Hum. Gene Ther. 20, P63
  • Wagner S, McCracken J, Bruszies S, Oswald, J, Oback B, Bode J & Laible S (2010) Minicircle episomal plasmids are stably transmitted in bovine fibroblasts. UC Davis Transgenic Animal Research Conference VII; Aug.17-22 Lake Tahoe. Transgenic Res  19:152–153. DOI 10.1007/s11248-009-9326-4
  • Rehberger, B., Heine, M., Wodarczyk, C., Wirth, M., Bode, J. & Wagner, R. (2011) ‘MiniCircles’ - New Horizons for Stable Recombinant Protein Expression? PDF
  • Heine, M., Rehberger, B., Wodarczyk, C., Wirth, M., Bode, J. & Wagner, R. (2011)  Simplify your ‘MiniCircle’ Production: A New Semi-synthetic Process for Manufacturing MiniCircle. PDF
    both: ESACT Wien. Mai 15-18, 2011, “Cell Based Technologies”
     
  • J Bode, N Heinz, K. Nehlsen, S Broll, S. Wagner, G Laible, W Kues, A Athanassiadou, M Schleef. Replicating minicircles: Overcoming the limitations of transient and stable expression system (Or29)
  • S Turan, J Kuehle, A Schambach, C Baum, J Bode. Versatile Extensions of the Flp-Recombinase-Mediated Cassette Exchange Technology: multiplexing RMCE meets the needs for predictable genome engineering (P59)
    both: European Society of Gene and Cell Therapy British Society for Gene Therapy Collaborative Congress ESACT 2011, Brighton (HUMAN GENE THERAPY 22:2, 2011) DOI: 10.1089/hum.2011.2525
     

Patentanmeldungen

  • J. Bode, J. Seibler and D. Schuebeler (1998-2005) EuropĂ€ische Patentanmeldung 98 103 490.3. DNA cassette exchange in regenerative vertebrate cells.
  • J, Bode, J. Seibler and D. Schuebeler (2005) Methods for marker-free repetitive DNA expression of cassette exchange in the genome of cells or parts of cells EP0939120, US20010032341, CA2263482, JP2000023679
  • Baiker, A., Bode, J., Fetzer, C., Lipps, H. J. & Piechaczek, C. (Deutsche und Internationale Patentanmeldung 10078487 / 1999) Episomal replizierender Vektor zur permanenten Expression eines Transgens in SĂ€ugerzellen.
  • Baiker, A., Stehle, I., Bode, J. & Lipps, H. J. (Deutsche und Internationale Patentanmeldung 2003) Synthetischer, episomal replizierender und mitotisch stabiler Vektor als Expressionssystem fĂŒr SĂ€ugerzellen.EuropĂ€ische Patentanmeldung 103 29 027.3-41.

Internet

Vorlesungen Biochemie:
FrĂŒher Teil der HZI-Seite, jetzt auf Anfrage unter juergenbode@t-online.de. Inhalte: WS06/07 WS07/08 PrĂŒfungsthemen

BeitrÀge in Wikipedia

  • - Biochemie:
    AffinitĂ€t, Adenosintriphosphat (Mitw.), Allosterie, Alpha-Helix, AminosĂ€ure (Mitw), ATPasen, Base (Chemie) (Mitw), Biochemische Zyklen (Mitw), Biotin (Mitw), Blutzucker (Mitw), Blutzucker-Sensorsystem, C3-Pflanzen, C4-Pflanzen, CAM-Pflanzen, Calvinzyklus, Cori-Zyklus, Crabtree-Effekt, Cyclisches_Adenosinmonophosphat (Mitw), cyclisches Guanosinmonophosphat, Eisen-Stoffwechsel, Energieladung, EnzymaktivitĂ€t und katalytische Effizienz, Enzymhemmung, Enzymkinetik, exergon, Fließgleichgewicht, Freie Enthalpie, Gewebshormon, Glucokinase, Gluconeogenese, GlutaminsĂ€ure (Mitw), Glukose-Stoffwechsel, Glykolyse (Mitw), Glyoxylat-Zyklus, GruppenĂŒbertragungspotential, HĂ€moglobin (Mitw), HĂ€mostase (Abb.), Insulin (Mitw), Integrin, Isoenzym, Katalase, KetosĂ€ureKohlendioxid-Fixierung, KooperativitĂ€t, Malatschleuse, Mehrsubstratreaktion, Membranrezeptor, Methode der kleinsten Quadrate (Abschnitt "Enzymkinetik"), Michaeliskonstante, Michaelis-Menten-Theorie, MilchsĂ€ure (Mitw), MilchsĂ€uregĂ€rung (Mitw), Multienzymkomplexe, Natrium-Kalium-Pumpe, Nukleosom, OxalessigsĂ€ure, Oxidativer Stress, Pasteur-Effekt, Pentosephosphatzyklus, Peroxisom (Mitw), Phosphofructokinase, Photorespiration, Prolin (Mitw), Prostaglandin, Proteinkinase A, Proteinkinase C, Pyruvat (Mitw.), Q-Zyklus, Redox-Potential, RegressionsanalyseRubisco (Mitw), second Messenger, Selenocystein, Sidney A. Bernhard, Somatostatin, Substratzyklus, Thrombozyt (Mitw), Transition und Transversion, Ubichinon, Wechselzahl

    - Molekularbiologie:
    Epigenetik, Genetischer Code (Mitw), Kernmatrix, Reverse Genetik, Rekombinase, RMCE Kassettenaustauschverfahren, Wobble

    - RadioaktivitÀt und Strahlenschutz
    Ionisierende Strahlung (Mitw), RadioaktivitÀt (Mitw), Radionuklid (Mitw), Strahlendosis
  •  

    bode.juergen@mh-hannover.de
    juergenbode@gmx.de

    Semester